| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
41 | 18-256 | 239 | 1-17, 257-489 | 17 | 233 | knot |
Chain Sequence |
PVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGLRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIR---ERQAGNVLQRLQRDPERDIYHTDNWGDC----------CGVLAIRFGWIFWFRHEEVHG-----PSGPRLTPRGSFEAWEE--------------VVRGHSTPWSETDLAIAEKLRLDLMELCL
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
4.1 | 16-297 | 282 | 1-15, 298-457 | 15 | 160 | knot | ||||
| view details |
 |
3.2m | 14-253 | 240 | 1-13 | 262-457 | 254-261 | 13 | 196 | slipknot | ||
| view details |
|
4.1 | 16-263 | 248 | 1-15 | 275-457 | 264-274 | 15 | 183 | slipknot | ||
| view details |
|
3.2m | 16-276 | 261 | 1-15 | 298-457 | 277-297 | 15 | 160 | slipknot | ||
| view details |
|
4.1 | 15-297 | 283 | 1-14 | 308-457 | 298-307 | 14 | 150 | slipknot | ||
| view details |
 |
3.2 | 20-298 | 279 | 299-457 | 1-15 | 16-19 | 15 | 158 | slipknot | ||
| view details |
|
3.2 | 19-258 | 240 | 1-13, 265-457 | 14-18, 259-264 | 13 | 193 | slipknot | |||
| view details |
|
3.2 | 19-264 | 246 | 1-16, 266-457 | 17-18, 265-265 | 16 | 192 | slipknot |
| sequence length |
489
|
| structure length |
457
|
| publication title |
Conformational differences between the Pfr and Pr states in Pseudomonas aeruginosa bacteriophytochrome.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
Bacteriophytochrome
|
| source organism |
Pseudomonas aeruginosa
|
| missing residues |
363-365, 391-400, 412-416, 429-442
|
| total genus |
 Genus: 114
|
| ec nomenclature |
ec
2.7.13.3: Histidine kinase. |
| pdb deposition date | 2009-07-16 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00360 | PHY | Phytochrome region |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
