3IBRA

Crystal structure of p. aeruginosa bacteriophytochrome photosensory core module mutant q188l in the mixed pr/pfr state
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 18-256 239 1-17, 257-489 17 233 knot
Chain Sequence
PVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGLRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIR---ERQAGNVLQRLQRDPERDIYHTDNWGDC----------CGVLAIRFGWIFWFRHEEVHG-----PSGPRLTPRGSFEAWEE--------------VVRGHSTPWSETDLAIAEKLRLDLMELCL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 16-297 282 1-15, 298-457 15 160 knot
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3.2m 14-253 240 1-13 262-457 254-261 13 196 slipknot
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4.1 16-263 248 1-15 275-457 264-274 15 183 slipknot
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3.2m 16-276 261 1-15 298-457 277-297 15 160 slipknot
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4.1 15-297 283 1-14 308-457 298-307 14 150 slipknot
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3.2 20-298 279 299-457 1-15 16-19 15 158 slipknot
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3.2 19-258 240 1-13, 265-457 14-18, 259-264 13 193 slipknot
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3.2 19-264 246 1-16, 266-457 17-18, 265-265 16 192 slipknot
missing residues 363-365, 391-400, 412-416, 429-442
publication title Conformational differences between the Pfr and Pr states in Pseudomonas aeruginosa bacteriophytochrome.
pubmed doi rcsb
structure length 457
molecule tags Transferase
source organism Pseudomonas aeruginosa
sequence length 489
total genus Genus: 114
molecule keywords Bacteriophytochrome
ec nomenclature ec 2.7.13.3: Histidine kinase.
pdb deposition date 2009-07-16
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00360 PHY Phytochrome region
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the pdb database (?% sequence similarity)

 
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