3J7Y5

Structure of the large ribosomal subunit from human mitochondria
Knot K -31 -31 -31 -31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-31 191-259 69 1-190, 260-392 190 133 knot
Chain Sequence
YEWGVRSTRKSEPPPLDRVYEIPGLEPITFAGKMHFVPWLARPIFPPWDRGYKDPRFYRSPPLHEHPLYKDQACYIFHHRCRLLEGVKQALWLTKTKLIEGLPEKVLSLVD--------QDECVLNVISHARLWQTTEEIPKRETYCPVIVDNLIQLCKSQILKHPSLARRICVQNSTFSATWNRESLLLQVRGSGGARLSTKDPLPTIASREEIEATKNHVLETFYPISPIIDLHECNIYDVKNDTGFQEGYPYPYPHTLYLLDKANLRPHRLQPDQLRAKMILFAFGSALAQARLLYGNDAKVLEQPVVVQSVGTDGRVFHFLVFQLNTTDLDGVKNLAWV---DSDQLLYQHFWCLPVIVEPVGPVGFKP-----ETFRKFLALYLHGA
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1m 75-363 289 1-74, 364-376 74 13 knot
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2.1m 179-306 128 1-171, 315-376 172-178, 307-314 171 62 slipknot
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2.1m 180-334 155 335-376 1-171 172-179 171 41 slipknot
view details
2.1m 185-263 79 1-175, 283-376 176-184, 264-282 175 94 slipknot
missing residues 112-119, 336-338, 363-367
publication title Structure of the large ribosomal subunit from human mitochondria.
pubmed doi rcsb
structure length 376
molecule tags Ribosome
sequence length 392
total genus Genus: 67
molecule keywords 16S rRNA
ec nomenclature
pdb deposition date 2014-08-26
KnotProt deposition date 2014-10-15
Image from the rcsb pdb (www.rcsb.org)
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