3J7Ys

Structure of the large ribosomal subunit from human mitochondria
Knot K -31 -31 -31 -31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-31 192-255 64 1-191, 256-390 191 135 knot
Chain Sequence
VARYPPIVASMTADSKAARLRRIERWQATVHAAESVDEKLRILTKMQFMKYMVYPQTFALNADRWYQYFTKTVFLSGLP--------------------AALRAVACDCLLQEHFYLRRRRRVHRYEESEVISLPFLDQLVSTLVGLLSPHNPALAAAALDYRCPVHFYWVRGEEIIPRGHRRGRIDDLRYQIDDKPNNQIRISKQLAEFVPLDYSVPIEIPTIKCKPDKLPLFKRQYENHIFVGSKTADPCCYGHTQFHLLPDKLRRERLLRQNCADQIEVVFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAVITDGKYFSFFCYQLNTLALTTQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQIVHFLLNRPK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1m 52-358 307 1-51, 359-370 51 12 knot
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3.1m 170-238 69 1-151, 259-370 152-169, 239-258 151 112 slipknot
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3.1m 171-240 70 1-151, 265-370 152-170, 241-264 151 106 slipknot
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2.1m 170-264 95 1-151, 278-370 152-169, 265-277 151 93 slipknot
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2.1m 162-277 116 1-156, 279-370 157-161, 278-278 156 92 slipknot
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3.1m 171-333 163 334-370 1-151 152-170 151 36 slipknot
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2.1m 171-264 94 1-169, 275-370 170-170, 265-274 169 96 slipknot
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3.1m 170-299 130 1-156, 312-370 157-169, 300-311 156 59 slipknot
missing residues 80-99
publication title Structure of the large ribosomal subunit from human mitochondria.
pubmed doi rcsb
structure length 370
molecule tags Ribosome
sequence length 390
total genus Genus: 26
molecule keywords 16S rRNA
ec nomenclature
pdb deposition date 2014-08-26
KnotProt deposition date 2014-10-15
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the pdb database (?% sequence similarity)

 
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