3KD8A

Cofactor-independent phosphoglycerate mutase from thermoplasma acidophilum dsm 1728
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 115
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 4-349 346 1-3 354-396 350-353 3 43 slipknot
Chain Sequence
MKSIILIVLDGLGDRPGSDLQNRTPLQAAFRPNLNWLASHGINGIMHPISP------DTSHMSLLGYDPKVYYPGRGPFEALGLGMDIRPGDLAFRANFATNRDGVIVDRRAGRENKGNEELADAISLDMGEYSFRVKSGVEHRAALVVSGPDLSDMIGDSDPHREGLPPEKIRPTDPSGDRTAEVMNAYLEEARRILSDHRVNKERVKNGRLPGNELLVRSAGKVPAIPSFTEKNRMKGACVVGSPWLKGLCRLLRMDVFDVPGSNYRGK------IEKAVDLTSSHDFVLVNIKATGNYPLKRDVIED------IDRAMEPLKSIGDHAVICVTGDGDPVPIVFYTDGVMNDGV-----------HLFDELSSASGSLRITSYNVMDILMQLAG
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 6-322 317 1-5 327-367 323-326 5 41 slipknot
sequence length 396
structure length 367
publication title Cofactor-Independent Phosphoglycerate mutase from Thermoplasma Acidophilum DSM 1728
rcsb
molecule tags Isomerase
molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
source organism Thermoplasma acidophilum
missing residues 52-57, 266-271, 299-304, 339-349
total genus Genus: 115
ec nomenclature ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date 2009-10-22
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01676 Metalloenzyme Metalloenzyme superfamily
Image from the rcsb pdb (www.rcsb.org)
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling