3L1LA

Structure of arg-bound escherichia coli adic
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 153
Slipknot S +31 41 +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 32-207 176 1-18, 433-434 19-31, 208-432 18 2 slipknot
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41 12-242 231 1-11 283-434 243-282 11 152 slipknot
Chain Sequence
AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMA-----------AIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNPYPLDA
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2 11-224 214 1-10 236-423 225-235 10 188 slipknot
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3.2m 12-235 224 1-11 242-423 236-241 11 182 slipknot
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4.1 10-241 232 1-9 251-423 242-250 9 173 slipknot
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3.2 7-255 249 1-6 262-423 256-261 6 162 slipknot
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3.2 17-250 234 1-3, 265-423 4-16, 251-264 3 159 slipknot
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4.1 17-264 248 1-3, 266-423 4-16, 265-265 3 158 slipknot
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3.2 17-265 249 1-4, 272-423 5-16, 266-271 4 152 slipknot
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2.1 36-192 157 1-13, 212-423 14-35, 193-211 13 212 slipknot
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1.1 34-214 181 1-14, 230-423 15-33, 215-229 14 194 slipknot
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2.1 35-279 245 1-14, 339-423 15-34, 280-338 14 85 slipknot
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2.1 35-341 307 1-14, 423-423 15-34, 342-422 14 1 slipknot
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3.2 22-249 228 1-16, 256-423 17-21, 250-255 16 168 slipknot
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2.1 26-211 186 1-20, 215-423 21-25, 212-214 20 209 slipknot
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1.1 28-211 184 1-25, 215-423 26-27, 212-214 25 209 slipknot
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1.1 34-211 178 1-27, 215-423 28-33, 212-214 27 209 slipknot
sequence length 434
structure length 423
publication title Mechanism of substrate recognition and transport by an amino acid antiporter
pubmed doi rcsb
molecule tags Transport protein
molecule keywords Arginine/agmatine antiporter
source organism Escherichia coli
missing residues 175-185
total genus Genus: 153
ec nomenclature
pdb deposition date 2009-12-13
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13520 AA_permease_2 Amino acid permease
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling