3LRBA

Structure of e. coli adic
Slipknot S +31 41 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 36-207 172 208-430 1-20 21-35 20 222 slipknot
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41 13-241 229 1-12 283-430 242-282 12 148 slipknot
Chain Sequence
DAHKVGLIPVTLMVSGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPN--------------------TAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNP
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 7-243 237 1-6 253-410 244-252 6 158 slipknot
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3.2 21-244 224 1-20 263-410 245-262 20 148 slipknot
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2.1 39-273 235 1-14, 323-410 15-38, 274-322 14 88 slipknot
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2.1 41-336 296 337-410 1-14 15-40 14 73 slipknot
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1.1 29-221 193 1-15, 242-410 16-28, 222-241 15 169 slipknot
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2.1 39-205 167 1-17, 228-410 18-38, 206-227 17 183 slipknot
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2.1 30-200 171 1-21, 206-410 22-29, 201-205 21 205 slipknot
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2.1 31-227 197 1-28, 230-410 29-30, 228-229 28 181 slipknot
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2.1 36-227 192 1-30, 230-410 31-35, 228-229 30 181 slipknot
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1.1 41-227 187 1-31, 243-410 32-40, 228-242 31 168 slipknot
missing residues 248-267
publication title Structure and mechanism of an amino acid antiporter
pubmed doi rcsb
structure length 410
molecule tags Transport protein
source organism Escherichia coli
sequence length 430
total genus Genus: 121
molecule keywords Arginine/agmatine antiporter
ec nomenclature
pdb deposition date 2010-02-10
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13520 AA_permease_2 Amino acid permease
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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