3LRCA

Structure of e. coli adic (p1)
Slipknot S +31 41 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 36-205 170 206-430 1-19 20-35 19 224 slipknot
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41 14-242 229 1-13 284-430 243-283 13 147 slipknot
Chain Sequence
DAHKVGLIPVTLMVSGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPN--------------------TAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNP
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 18-241 224 1-17 260-410 242-259 17 151 slipknot
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1.1 24-221 198 1-12, 241-410 13-23, 222-240 12 170 slipknot
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2.1 39-275 237 1-13, 333-410 14-38, 276-332 13 78 slipknot
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2.1 32-198 167 1-15, 215-410 16-31, 199-214 15 196 slipknot
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2.1 32-214 183 1-15, 224-410 16-31, 215-223 15 187 slipknot
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2.1 40-341 302 342-410 1-15 16-39 15 68 slipknot
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2.1 35-203 169 1-31, 224-410 32-34, 204-223 31 187 slipknot
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2.1 27-223 197 1-23, 227-410 24-26, 224-226 23 184 slipknot
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2.1 34-223 190 1-26, 227-410 27-33, 224-226 26 184 slipknot
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2.1 32-234 203 1-23, 242-410 24-31, 235-241 23 169 slipknot
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2.1 32-226 195 1-24, 234-410 25-31, 227-233 24 177 slipknot
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2.1 34-196 163 1-25, 204-410 26-33, 197-203 25 207 slipknot
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2.1 39-225 187 1-29, 243-410 30-38, 226-242 29 168 slipknot
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1.1 39-221 183 1-33, 226-410 34-38, 222-225 33 185 slipknot
missing residues 248-267
publication title Structure and mechanism of an amino acid antiporter
pubmed doi rcsb
structure length 410
molecule tags Transport protein
source organism Escherichia coli
sequence length 430
total genus Genus: 110
molecule keywords Arginine/agmatine antiporter
ec nomenclature
pdb deposition date 2010-02-11
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13520 AA_permease_2 Amino acid permease
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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