3LXQA

The crystal structure of a protein in the alkaline phosphatase superfamily from vibrio parahaemolyticus to 1.95a
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 52-266 215 1-51 286-409 267-285 51 124 slipknot
Chain Sequence
SAEQFYGKMDNQKMLDLVRASSTKIDFDPTLLPTMNSNPATYQGKRKNLVILLQESLGAQFVGSLGGLPLTPNLDELMQEGWQFTQMYATGTRSVRGIEAVTTGFPPSPSRAVVKLSKSQTGFFTIADLLKEQGYHTQFIYGGEANFDNMKTFFFGNGFDQIVEEKNYTNPGFVGSWGVSDEDLYNKADEEFERLSKGDKPFFSLVFTSSNHSPYEYPEGKIEQYDSEHMTRNNAVKYSDYALGTFFDKAKKSSYWDDTIFIVIADHDARVFGANLVPVKHFHIPALIIGKDIQPRKDDRIANNIDMPPTLLSLIGVDAKTPMIGRDLTKPLAREDERAMMQYDKNFGYLTRDNLVVLSPGEKVSTMEYDFESQTMKPLEVDESVIDRAKANALFASKAYQNNWYSSKR
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 49-265 217 1-48 284-409 266-283 48 126 slipknot
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2.1 27-283 257 1-26 287-409 284-286 26 123 slipknot
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2.1 35-264 230 1-3, 266-409 4-34, 265-265 3 144 slipknot
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3.1 48-283 236 1-26, 287-409 27-47, 284-286 26 123 slipknot
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2.1 48-263 216 1-35, 266-409 36-47, 264-265 35 144 slipknot
view details
2.1 49-283 235 1-47, 286-409 48-48, 284-285 47 124 slipknot
sequence length 409
structure length 409
publication title The Crystal Structure of a Protein in the Alkaline Phosphatase Superfamily from Vibrio parahaemolyticus to 1.95A
rcsb
molecule tags Structural genomics, unknown function
molecule keywords Uncharacterized protein VP1736
source organism Vibrio parahaemolyticus
total genus Genus: 134
ec nomenclature
pdb deposition date 2010-02-25
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00884 Sulfatase Sulfatase
Image from the rcsb pdb (www.rcsb.org)
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