3MPNA

F177r1 mutant of leut
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Slipknot S +31 41 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 39-262 224 263-507 1-20 21-38 20 244 slipknot
view details
41 13-293 281 1-12 349-507 294-348 12 159 slipknot
Chain Sequence
REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPP--TDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMCINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAERRRNHE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.2 10-286 277 1-9 300-505 287-299 9 206 slipknot
view details
4.1 10-299 290 1-9 315-505 300-314 9 191 slipknot
view details
4.1 8-314 307 1-7 321-505 315-320 7 185 slipknot
view details
3.2 15-337 323 1-14 349-505 338-348 14 157 slipknot
view details
3.2 11-298 288 1-9, 314-505 10-10, 299-313 9 192 slipknot
view details
2.1 21-492 472 1-15, 505-505 16-20, 493-504 15 1 slipknot
view details
2.1 41-403 363 404-505 1-16 17-40 16 101 slipknot
view details
2.1 41-355 315 1-17, 397-505 18-40, 356-396 17 109 slipknot
view details
2.1 30-259 230 1-18, 276-505 19-29, 260-275 18 230 slipknot
view details
2.1 24-278 255 1-18, 286-505 19-23, 279-285 18 220 slipknot
view details
2.1 34-256 223 1-19, 272-505 20-33, 257-271 19 234 slipknot
view details
3.1 34-271 238 1-29, 276-505 30-33, 272-275 29 230 slipknot
view details
1.1 35-276 242 1-26, 289-505 27-34, 277-288 26 217 slipknot
view details
1.1 39-243 205 1-28, 252-505 29-38, 244-251 28 254 slipknot
view details
1.1 35-252 218 1-28, 258-505 29-34, 253-257 28 248 slipknot
view details
1.1 41-272 232 1-30, 294-505 31-40, 273-293 30 212 slipknot
view details
2.1 42-261 220 1-35, 272-505 36-41, 262-271 35 234 slipknot
missing residues 129-130
publication title Structural origins of nitroxide side chain dynamics on membrane protein alpha-helical sites.
pubmed doi rcsb
structure length 505
molecule tags Membrane protein
source organism Aquifex aeolicus
sequence length 507
total genus Genus: 216
molecule keywords Transporter
ec nomenclature
pdb deposition date 2010-04-27
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00209 SNF Sodium:neurotransmitter symporter family
Image from the rcsb pdb (www.rcsb.org)
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling