3MPQA

I204r1 mutant of leut
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 207
Slipknot S +31 41 +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 40-265 226 266-507 1-21 22-39 21 241 slipknot
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41 14-294 281 1-13 351-507 295-350 13 157 slipknot
Chain Sequence
KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEP-----DPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFCLAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVTHWTV------------WITRFYIIGLFLFLTFLVFLAERRRNH
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2 14-285 272 1-13 299-490 286-298 13 192 slipknot
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4.1 11-298 288 1-10 307-490 299-306 10 184 slipknot
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4.1 11-306 296 1-10 312-490 307-311 10 179 slipknot
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3.2 16-331 316 1-15 348-490 332-347 15 143 slipknot
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3.2m 12-319 308 1-4, 329-490 5-11, 320-328 4 162 slipknot
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3.2 14-313 300 1-5, 321-490 6-13, 314-320 5 170 slipknot
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4.1 12-298 287 1-10, 307-490 11-11, 299-306 10 184 slipknot
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4.1 13-298 286 1-11, 307-490 12-12, 299-306 11 184 slipknot
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3.2 18-325 308 1-11, 331-490 12-17, 326-330 11 160 slipknot
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2.1 42-399 358 400-490 1-18 19-41 18 90 slipknot
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2.1 37-252 216 1-19, 269-490 20-36, 253-268 19 222 slipknot
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1.1 41-273 233 1-26, 293-490 27-40, 274-292 26 198 slipknot
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1.1 40-243 204 1-29, 253-490 30-39, 244-252 29 238 slipknot
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1.1 40-252 213 1-36, 255-490 37-39, 253-254 36 236 slipknot
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2.1 43-258 216 1-36, 271-490 37-42, 259-270 36 220 slipknot
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2.1 43-270 228 1-36, 275-490 37-42, 271-274 36 216 slipknot
sequence length 507
structure length 490
publication title Structural origins of nitroxide side chain dynamics on membrane protein alpha-helical sites.
pubmed doi rcsb
molecule tags Membrane protein
molecule keywords Transporter
source organism Aquifex aeolicus
missing residues 128-132, 464-475
total genus Genus: 207
ec nomenclature
pdb deposition date 2010-04-27
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00209 SNF Sodium:neurotransmitter symporter family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling