3NHQA

The dark pfr structure of the photosensory core module of p. aeruginosa bacteriophytochrome
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 19-257 239 1-18, 258-490 18 233 knot
Chain Sequence
TPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNW-----------DCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 18-296 279 1-17, 297-479 17 183 knot
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3.2m 18-253 236 1-17 262-479 254-261 17 218 slipknot
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4.1 8-261 254 1-7 267-479 262-266 7 213 slipknot
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3.2m 17-262 246 1-16 274-479 263-273 16 206 slipknot
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3.2m 15-273 259 1-14 275-479 274-274 14 205 slipknot
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3.2m 17-277 261 1-16 295-479 278-294 16 185 slipknot
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4.1 20-306 287 307-479 1-17 18-19 17 172 slipknot
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4.1 21-306 286 307-479 1-19 20-20 19 172 slipknot
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3.2 20-297 278 1-17, 306-479 18-19, 298-305 17 174 slipknot
missing residues 392-402
publication title Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome.
pubmed doi rcsb
structure length 479
molecule tags Signaling protein
source organism Pseudomonas aeruginosa
sequence length 490
total genus Genus: 143
molecule keywords Bacteriophytochrome
ec nomenclature ec 2.7.13.3: Histidine kinase.
pdb deposition date 2010-06-14
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00360 PHY Phytochrome region
Image from the rcsb pdb (www.rcsb.org)
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