3NIQA

Crystal structure of pseudomonas aeruginosa guanidinopropionase
Slipknot S +31 +31 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 22-153 132 1-19, 307-315 20-21, 154-306 19 9 slipknot
Chain Sequence
DHPQPLDAAEIPRFAGIPTFMRLPAFTDPAALQVGLIGVPWDGGTTNRAGARHGPREVRNLSSLMRKVHHVSRIAPYDLVRVGDLGDAPVNPIDLLDSLRRIEGFYRQVHAAGTLPLSVGGDHLVTLPIFRALGRERPLGMVHFDAHSDTNDRYFGDNPYTHGTPFRRAIEEGLLDPLRTVQIGIRGSVYSPDDDAFARECGIRVIHMEEFVELGVEATLAEARRVVGAGPTYVSFDVDVLDPAFAPGTGTPEIGGMTSLQAQQLVRGLRGLDLVGADVVEVSPPFDVGGATALVGATMMFELLCLLAESAARSA
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 22-259 238 1-18, 266-315 19-21, 260-265 18 50 slipknot
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2.1 23-121 99 1-19, 135-315 20-22, 122-134 19 181 slipknot
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2.1 24-151 128 1-19, 159-315 20-23, 152-158 19 157 slipknot
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2.1 23-244 222 1-19, 250-315 20-22, 245-249 19 66 slipknot
publication title Crystal structures of Pseudomonas aeruginosa guanidinobutyrase and guanidinopropionase, members of the ureohydrolase superfamily
pubmed doi rcsb
structure length 315
molecule tags Hydrolase
source organism Pseudomonas aeruginosa
sequence length 315
total genus Genus: 116
molecule keywords 3-guanidinopropionase
ec nomenclature ec 3.5.3.17: Guanidinopropionase.
pdb deposition date 2010-06-16
KnotProt deposition date 2014-10-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00491 Arginase Arginase family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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