| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 120-307 | 188 | 1-119 | 437-805 | 308-436 | 119 | 369 | slipknot |
Chain Sequence |
WTNTSGSCKGRCFELQEVGPPDCRCDNLCKSYSSCCHDFDELCLKTARGWECTKDRCGEVRNEENACHCSEDCLSRGDCCTNYQVVCKGESHWVDDDCEEIRVPECPAGFVRPPLIIFSVDGFRASYMKKGSKVMPNIEKLRSCGTHAPYMRPVYPTKTFPNLYTLATGLYPESHGIVGNSMYDPVFDATFHLRGREKFNHRWWGGQPLWITATKQGVRAGTFFWSVSIPHERRILTILQWLSLPDNERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLREIDKTVGQLMDGLKQLKLHRCVNVIFVGDHGMEDVTCDRTEFLSNYLTNVDDITLVPGTLGRIRPKIPNNLKYDPKAIIANLTCKKPDQHFKPYMKQHLPKRLHYANNRRIEDLHLLVERRWHVARKPL---------CFFQGDHGFDNKVNSMQTVFVGYGPTFKYRTKVPPFENIELYNVMCDLLGLKPAPNNGTHGSLNHLLRTNTFRPTLPEEVSRPNYPGIMYLQSDFDLGCTCDGSTEERHLL---------------YGRPAVLYRTSYDILYHTDFESGYSEIFLMPLWTSYTISKQAEVSSIPEHLTNCVRPDVRVSPGFSQNCLAYKNDKQMSYGFLFPPYLSSSPEAKYDAFLVTNMVPMYPAFKRVWTYFQRVLVKKYASERNGVNVISGPIFDYNYNGLRDIEDEIKQYVEGSSIPVPTHYYSIITSCLDFTQPADKCDGPLSVSSFILPHRPDNDESCNSSEDESKWVEELMKMHTARVRDIEHLTGLDFYRKTSRSYSEILTLKTYLHTYE
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 119-308 | 190 | 1-118 | 426-781 | 309-425 | 118 | 356 | slipknot | ||
| view details |
|
 |
2.1 | 46-425 | 380 | 1-29, 430-781 | 30-45, 426-429 | 29 | 352 | slipknot | ||
| view details |
|
2.1 | 65-306 | 242 | 1-33, 309-781 | 34-64, 307-308 | 33 | 473 | slipknot | |||
| view details |
|
|
2.1 | 50-425 | 376 | 1-45, 430-781 | 46-49, 426-429 | 45 | 352 | slipknot | ||
| view details |
|
2.1 | 108-305 | 198 | 1-57, 309-781 | 58-107, 306-308 | 57 | 473 | slipknot | |||
| view details |
|
3.1 | 121-379 | 259 | 1-118, 385-781 | 119-120, 380-384 | 118 | 397 | slipknot | |||
| view details |
|
2.1 | 122-358 | 237 | 1-118, 365-781 | 119-121, 359-364 | 118 | 417 | slipknot |
| sequence length |
805
|
| structure length |
781
|
| publication title |
Crystal structure of autotaxin and insight into GPCR activation by lipid mediators
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| molecule keywords |
Ectonucleotide pyrophosphatase/phosphodiesterase family memb
|
| source organism |
Mus musculus
|
| missing residues |
409-417, 520-534
|
| total genus |
 Genus: 254
|
| ec nomenclature |
ec
3.1.4.39: Alkylglycerophosphoethanolamine phosphodiesterase. |
| pdb deposition date | 2010-06-20 |
| KnotProt deposition date | 2014-10-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01033 | Somatomedin_B | Somatomedin B domain |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
