| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 119-307 | 189 | 1-118 | 436-805 | 308-435 | 118 | 370 | slipknot |
Chain Sequence |
WTNTSGSCKGRCFELQEVGPPDCRCDNLCKSYSSCCHDFDELCLKTARGWECTKDRCGEVRNEENACHCSEDCLSRGDCCTNYQVVCKGESHWVDDDCEEIRVPECPAGFVRPPLIIFSVDGFRASYMKKGSKVMPNIEKLRSCGTHAPYMRPVYPTKTFPNLYTLATGLYPESHGIVGNSMYDPVFDATFHLRGREKFNHRWWGGQPLWITATKQGVRAGTFFWSVSIPHERRILTILQWLSLPDNERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLREIDKTVGQLMDGLKQLKLHRCVNVIFVGDHGMEDVTCDRTEFLSNYLTNVDDITLVPGTLGRIRPKIPNNLKYDPKAIIANLTCKKPDQHFKPYMKQHLPKRLHYANNRRIEDLHLLVERRWHVARKPL---------CFFQGDHGFDNKVNSMQTVFVGYGPTFKYRTKVPPFENIELYNVMCDLLGLKPAPNNGTHGSLNHLLRTNTFRPTLPEEVSRPNYPGIMYLQSDFDLGCTCDTEERHLLYG-----------------RPAVLYRTSYDILYHTDFESGYSEIFLMPLWTSYTISKQAEVSSIPEHLTNCVRPDVRVSPGFSQNCLAYKNDKQMSYGFLFPPYLSSSPEAKYDAFLVTNMVPMYPAFKRVWTYFQRVLVKKYASERNGVNVISGPIFDYNYNGLRDIEDEIKQYVEGSSIPVPTHYYSIITSCLDFTQPADKCDGPLSVSSFILPHRPDNDESCNSSEDESKWVEELMKMHTARVRDIEHLTGLDFYRKTSRSYSEILTLKTYLHTYE
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1 | 28-305 | 278 | 1-27 | 312-779 | 306-311 | 27 | 468 | slipknot | ||
| view details |
 |
3.1 | 119-308 | 190 | 1-118 | 426-779 | 309-425 | 118 | 354 | slipknot | ||
| view details |
|
|
3.1 | 119-425 | 307 | 1-118 | 427-779 | 426-426 | 118 | 353 | slipknot | |
| view details |
|
2.1 | 49-305 | 257 | 1-28, 309-779 | 29-48, 306-308 | 28 | 471 | slipknot | |||
| view details |
|
2.1 | 53-305 | 253 | 1-48, 309-779 | 49-52, 306-308 | 48 | 471 | slipknot | |||
| view details |
|
2.1 | 59-305 | 247 | 1-52, 309-779 | 53-58, 306-308 | 52 | 471 | slipknot |
| sequence length |
805
|
| structure length |
779
|
| publication title |
Crystal structure of autotaxin and insight into GPCR activation by lipid mediators
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| molecule keywords |
Ectonucleotide pyrophosphatase/phosphodiesterase family memb
|
| source organism |
Mus musculus
|
| missing residues |
409-417, 520-536
|
| total genus |
 Genus: 250
|
| ec nomenclature |
ec
3.1.4.39: Alkylglycerophosphoethanolamine phosphodiesterase. |
| pdb deposition date | 2010-06-20 |
| KnotProt deposition date | 2014-10-06 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01033 | Somatomedin_B | Somatomedin B domain |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
