3NOPC

Light-induced intermediate structure l1 of pseudomonas aeruginosa bacteriophytochrome
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 20-258 239 1-19, 259-493 19 235 knot
Chain Sequence
ITPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNW----------GDCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCLNH
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 18-297 280 1-17, 298-483 17 186 knot
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3.2m 17-254 238 1-16 263-483 255-262 16 221 slipknot
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3.2m 18-264 247 1-17 276-483 265-275 17 208 slipknot
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3.2m 17-278 262 1-16 299-483 279-298 16 185 slipknot
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4.1 14-262 249 1-4, 265-483 5-13, 263-264 4 219 slipknot
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4.1 22-296 275 1-16, 440-483 17-21, 297-439 16 44 slipknot
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4.1 21-439 419 1-17, 443-483 18-20, 440-442 17 41 slipknot
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3.2 22-443 422 444-483 1-17 18-21 17 39 slipknot
missing residues 393-402
publication title Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome.
pubmed doi rcsb
structure length 483
molecule tags Signaling protein
source organism Pseudomonas aeruginosa
sequence length 493
total genus Genus: 142
molecule keywords Bacteriophytochrome
ec nomenclature ec 2.7.13.3: Histidine kinase.
pdb deposition date 2010-06-25
KnotProt deposition date 2014-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00360 PHY Phytochrome region
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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