3NOTC

Light-induced intermediate structure l2 of p. aeruginosa bacteriophytochrome
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 20-258 239 1-19, 259-493 19 235 knot
Chain Sequence
ITPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNW----------GDCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCLNH
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 18-298 281 1-17, 299-483 17 185 knot
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3.2m 18-256 239 1-17 265-483 257-264 17 219 slipknot
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3.2m 16-265 250 1-15 276-483 266-275 15 208 slipknot
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3.2m 18-279 262 1-17 299-483 280-298 17 185 slipknot
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4.1 21-260 240 1-14, 268-483 15-20, 261-267 14 216 slipknot
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3.2 22-296 275 1-17, 373-483 18-21, 297-372 17 111 slipknot
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3.2 22-372 351 1-17, 443-483 18-21, 373-442 17 41 slipknot
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4.1 21-442 422 443-483 1-17 18-20 17 40 slipknot
missing residues 393-402
publication title Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome.
pubmed doi rcsb
structure length 483
molecule tags Signaling protein
source organism Pseudomonas aeruginosa
sequence length 493
total genus Genus: 143
molecule keywords Bacteriophytochrome
ec nomenclature ec 2.7.13.3: Histidine kinase.
pdb deposition date 2010-06-25
KnotProt deposition date 2014-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00360 PHY Phytochrome region
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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