3NOUC

Light-induced intermediate structure l3 of p. aeruginosa bacteriophytochrome
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 20-258 239 1-19, 259-493 19 235 knot
Chain Sequence
ITPVTLANCEDEPIHVPGAIQPHGALVTLRADGMVLAASENIQALLGFVASPGSYLTQEQVGPEVLRMLEEGLTGNGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFEIRTADTLSITSFTLNAQRIIAQVQLHNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHMSPKLIPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERDIYHTDNW----------GDCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCLNH
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 18-298 281 1-17, 299-483 17 185 knot
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3.2m 17-255 239 1-16 264-483 256-263 16 220 slipknot
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4.1 8-263 256 1-7 269-483 264-268 7 215 slipknot
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3.2m 18-264 247 1-17 274-483 265-273 17 210 slipknot
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3.2m 18-273 256 1-17 276-483 274-275 17 208 slipknot
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3.2m 18-278 261 1-17 298-483 279-297 17 186 slipknot
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4.1 21-295 275 1-13, 442-483 14-20, 296-441 13 42 slipknot
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3.2 22-295 274 1-20, 441-483 21-21, 296-440 20 43 slipknot
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3.2 21-441 421 1-17, 445-483 18-20, 442-444 17 39 slipknot
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3.2 21-444 424 445-483 1-17 18-20 17 38 slipknot
missing residues 393-402
publication title Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome.
pubmed doi rcsb
structure length 483
molecule tags Signaling protein
source organism Pseudomonas aeruginosa
sequence length 493
total genus Genus: 143
molecule keywords Bacteriophytochrome
ec nomenclature ec 2.7.13.3: Histidine kinase.
pdb deposition date 2010-06-25
KnotProt deposition date 2014-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00360 PHY Phytochrome region
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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