3O0PA

Pilus-related sortase c of group b streptococcus
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Knot K -31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
-31 144-203 60 1-143, 204-206 143 3 knot
Chain Sequence
QTQDFERAAKKLSQKEINRRMALAQAYNDSLNNVHLEDPYEKKRI--GIAEYARMLEVSEKIGIISVPKIGQKLPIFAGSSQEVLSKGAGHLEGTSLPIGGNSTHTVITAHSGIPDKELFSNLKKLKKGDKFYIQNIKETIAYQVDQIKVVTPDNFSDLLVVPGHDYATLLTCTPIMVNTHRLLVRGHRIPYKGH----------L
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1m 142-191 50 1-141, 192-194 141 3 knot
missing residues 46-47, 194-203
publication title Structure analysis and site-directed mutagenesis of defined key residues and motives for pilus-related sortase C1 in group B Streptococcus.
pubmed doi rcsb
structure length 194
molecule tags Transferase , hydrolase
source organism Streptococcus agalactiae
sequence length 206
total genus Genus: 55
molecule keywords Sortase family protein
ec nomenclature
pdb deposition date 2010-07-19
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04203 Sortase Sortase family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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