| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 152-198 | 47 | 1-151, 199-225 | 151 | 27 | knot |
Chain Sequence |
PPVLTSKDKITKRMIVVLAMASLETHKI--------KYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNIL
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 144-193 | 50 | 1-143, 194-217 | 143 | 24 | knot | ||||
| view details |
 |
2.1 | 57-187 | 131 | 1-56 | 194-217 | 188-193 | 56 | 24 | slipknot | ||
| view details |
|
3.1 | 143-190 | 48 | 1-142 | 202-217 | 191-201 | 142 | 16 | slipknot |
| sequence length |
225
|
| structure length |
217
|
| publication title |
Structural insight into the functional mechanism of Nep1/Emg1 N1-specific pseudouridine methyltransferase in ribosome biogenesis.
pubmed doi rcsb |
| molecule tags |
Ribosomal protein
|
| molecule keywords |
Essential for mitotic growth 1
|
| source organism |
Saccharomyces cerevisiae
|
| missing residues |
29-36
|
| total genus |
 Genus: 66
|
| ec nomenclature |
ec
2.1.1.260: rRNA small subunit pseudouridine methyltransferase Nep1. |
| pdb deposition date | 2010-08-19 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03587 | EMG1 | EMG1/NEP1 methyltransferase |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
