| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 194-271 | 78 | 1-193, 272-396 | 193 | 125 | knot |
Chain Sequence |
MMKTVNELIKDINSLTSHLHEKDFLLTWEQTPDELKQVLDVAAALKALRAENISTKVFNSGLGISVFRD-----RFSYASALNLLGLAQQDLDHGETV-------RETANMISFCADAIGIRDDMYLGAYMREVGAALDD---GYKQGVLPQRPALVNLQCDIDHPTQSMADLAWLREHFGSLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDADIVYPKSWAPYKVMEERTELLRANDHEGLKALEKQCLAQNAQHKDWHCTEEMMELTRDGEALYMHCLPADISGVSCKEGEVTEGVFEKYRIATYKEASWKPYIIAAMILSRKYAKPGALLEQLLKEAQERVK
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 180-256 | 77 | 1-179, 257-381 | 179 | 125 | knot | ||||
| view details |
 |
2.1 | 176-253 | 78 | 1-43, 257-381 | 44-175, 254-256 | 43 | 125 | slipknot |
| sequence length |
396
|
| structure length |
381
|
| publication title |
The ygeW encoded protein from Escherichia coli is a knotted ancestral catabolic transcarbamylase.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
transcarbamylase
|
| source organism |
Escherichia coli
|
| missing residues |
70-74, 94-100, 129-131
|
| total genus |
 Genus: 125
|
| ec nomenclature | |
| pdb deposition date | 2011-01-07 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00185 | OTCace | Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
