3Q98A

Structure of ygew encoded protein from e. coli
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 194-271 78 1-193, 272-396 193 125 knot
Chain Sequence
MMKTVNELIKDINSLTSHLHEKDFLLTWEQTPDELKQVLDVAAALKALRAENISTKVFNSGLGISVFRD-----RFSYASALNLLGLAQQDLDHGETV-------RETANMISFCADAIGIRDDMYLGAYMREVGAALDD---GYKQGVLPQRPALVNLQCDIDHPTQSMADLAWLREHFGSLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDADIVYPKSWAPYKVMEERTELLRANDHEGLKALEKQCLAQNAQHKDWHCTEEMMELTRDGEALYMHCLPADISGVSCKEGEVTEGVFEKYRIATYKEASWKPYIIAAMILSRKYAKPGALLEQLLKEAQERVK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 180-256 77 1-179, 257-381 179 125 knot
view details
2.1 176-253 78 1-43, 257-381 44-175, 254-256 43 125 slipknot
missing residues 70-74, 94-100, 129-131
publication title The ygeW encoded protein from Escherichia coli is a knotted ancestral catabolic transcarbamylase.
pubmed doi rcsb
structure length 381
molecule tags Transferase
source organism Escherichia coli
sequence length 396
total genus Genus: 125
molecule keywords transcarbamylase
ec nomenclature
pdb deposition date 2011-01-07
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
Image from the rcsb pdb (www.rcsb.org)
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