3QE7A

Crystal structure of uracil transporter--uraa
Slipknot S +31 41 +31 +31 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 92-235 144 236-407 1-24 25-91 24 171 slipknot
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41 21-316 296 1-20 335-407 317-334 20 73 slipknot
Chain Sequence
RAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTLYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGMALATIVGIGLSLIFKLIS
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2 13-315 303 1-12 329-407 316-328 12 79 slipknot
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2.1 46-344 299 345-407 1-23 24-45 23 62 slipknot
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1.1 36-283 248 1-24, 294-407 25-35, 284-293 24 114 slipknot
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1.1 39-232 194 1-25, 246-407 26-38, 233-245 25 162 slipknot
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2.1 36-293 258 1-25, 302-407 26-35, 294-301 25 106 slipknot
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2.1 36-301 266 1-25, 303-407 26-35, 302-302 25 105 slipknot
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2.1 39-291 253 1-35, 302-407 36-38, 292-301 35 106 slipknot
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2.1 39-301 263 1-35, 303-407 36-38, 302-302 35 105 slipknot
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2.1 44-292 249 1-38, 303-407 39-43, 293-302 38 105 slipknot
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1.1 46-317 272 1-35, 329-407 36-45, 318-328 35 79 slipknot
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1.1 77-232 156 1-66, 247-407 67-76, 233-246 66 161 slipknot
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1.1 77-277 201 1-66, 290-407 67-76, 278-289 66 118 slipknot
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2.1 92-332 241 333-407 1-67 68-91 67 74 slipknot
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3.1 78-289 212 1-68, 304-407 69-77, 290-303 68 104 slipknot
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3.1 86-290 205 1-72, 310-407 73-85, 291-309 72 98 slipknot
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3.1 85-243 159 1-74, 262-407 75-84, 244-261 74 146 slipknot
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3.1 86-243 158 1-84, 262-407 85-85, 244-261 84 146 slipknot
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2.1 92-291 200 1-82, 311-407 83-91, 292-310 82 97 slipknot
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2.1 92-310 219 1-82, 313-407 83-91, 311-312 82 95 slipknot
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2.1 92-312 221 1-82, 318-407 83-91, 313-317 82 90 slipknot
publication title Structure and mechanism of the uracil transporter UraA
pubmed doi rcsb
structure length 407
molecule tags Transport protein
source organism Escherichia coli
sequence length 407
total genus Genus: 139
molecule keywords Uracil permease
ec nomenclature
pdb deposition date 2011-01-20
KnotProt deposition date 2014-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00860 Xan_ur_permease Permease family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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