| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 238-416 | 179 | 1-237 | 433-442 | 417-432 | 237 | 10 | slipknot |
Chain Sequence |
VGPSVLPDLREQVEQIIAEARRQGASACEVAVSLEQGLSTSVRQGEVETVEFNRDQGFGITLYAGQRKGSASTSATGEAAIRETVAAALAIARHTSEDECAGLADAALMARELPELDLYHPWSLSPEQAVERALACEAAAFAADKRVTKADGTTLNTHQGCRVYGNSHGFIGGYASTRHSLSCVMIAEGEGQMQRDYWYDVNRRGEALASAESIGRRAAERAASRLGARPVQTAEVPVLFAPEIAVGLFGHFLGAISGGSLYRKSSFLEGALGQRLFPEWLSIDERPHLVGALGSASFDSDGLATYAKPFVENGELVSYVLGTYSGRKLGLPSTANAGGVHNLFVSHGDEDQAALIRRMERGLLVTELMGQGVNLVTGDYSRGAAGYWVENGEIQFPVQEVTIAANLRDLFRRIVAVGKDIERRGNLHTGSVLVESMMVAGR
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 163-418 | 256 | 1-162 | 431-442 | 419-430 | 162 | 12 | slipknot | ||
| view details |
|
3.1 | 236-418 | 183 | 1-162, 431-442 | 163-235, 419-430 | 162 | 12 | slipknot | |||
| view details |
|
3.1 | 237-420 | 184 | 1-235, 429-442 | 236-236, 421-428 | 235 | 14 | slipknot |
| sequence length |
442
|
| structure length |
442
|
| publication title |
Crystal structure of putative modulator of gyrase (PmbA) from Pseudomonas aeruginosa PAO1
rcsb |
| molecule tags |
Gene regulation
|
| molecule keywords |
PmbA protein
|
| source organism |
Pseudomonas aeruginosa
|
| total genus |
 Genus: 132
|
| ec nomenclature | |
| pdb deposition date | 2011-02-22 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01523 | PmbA_TldD | Putative modulator of DNA gyrase |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
