3QTDA

Crystal structure of putative modulator of gyrase (pmba) from pseudomonas aeruginosa pao1
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 238-416 179 1-237 433-442 417-432 237 10 slipknot
Chain Sequence
VGPSVLPDLREQVEQIIAEARRQGASACEVAVSLEQGLSTSVRQGEVETVEFNRDQGFGITLYAGQRKGSASTSATGEAAIRETVAAALAIARHTSEDECAGLADAALMARELPELDLYHPWSLSPEQAVERALACEAAAFAADKRVTKADGTTLNTHQGCRVYGNSHGFIGGYASTRHSLSCVMIAEGEGQMQRDYWYDVNRRGEALASAESIGRRAAERAASRLGARPVQTAEVPVLFAPEIAVGLFGHFLGAISGGSLYRKSSFLEGALGQRLFPEWLSIDERPHLVGALGSASFDSDGLATYAKPFVENGELVSYVLGTYSGRKLGLPSTANAGGVHNLFVSHGDEDQAALIRRMERGLLVTELMGQGVNLVTGDYSRGAAGYWVENGEIQFPVQEVTIAANLRDLFRRIVAVGKDIERRGNLHTGSVLVESMMVAGR
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 163-418 256 1-162 431-442 419-430 162 12 slipknot
view details
3.1 236-418 183 1-162, 431-442 163-235, 419-430 162 12 slipknot
view details
3.1 237-420 184 1-235, 429-442 236-236, 421-428 235 14 slipknot
publication title Crystal structure of putative modulator of gyrase (PmbA) from Pseudomonas aeruginosa PAO1
rcsb
structure length 442
molecule tags Gene regulation
source organism Pseudomonas aeruginosa
sequence length 442
total genus Genus: 132
molecule keywords PmbA protein
ec nomenclature
pdb deposition date 2011-02-22
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01523 PmbA_TldD Putative modulator of DNA gyrase
Image from the rcsb pdb (www.rcsb.org)
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