3RV2A

Crystal structure of s-adenosylmethionine synthetase from mycobacterium marinum
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 130
Knot K +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 16-283 268 1-15, 284-399 15 116 knot
Chain Sequence
GRLFTSESVTEGHPDKICDAVSDSVLDALLAADPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNIVRERILDIGYDSSDKGFDGASCGVNIGIGAQSP--------------------------GDQGLMFGYAINDTPELMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTIAYEDRVPVRLDTVVISTQHADDIDLVKTLDPDIREQVLKTVLDDLAHDTLDASAVRVLVNPTGKFVLGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLAERVEVQVAYAIGKAAPVGLFVETFGSEAVDPVKIEKAIGEVFDLRPGAIIRDLNLLRPIYAPTAAYGHFGRTDVDLPWERLDKVDDLKRAI
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 18-270 253 1-17 333-373 271-332 17 41 slipknot
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2.1 16-357 342 358-373 1-2 3-15 2 15 slipknot
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2.1 17-358 342 359-373 1-15 16-16 15 14 slipknot
sequence length 399
structure length 373
publication title Crystal structure of S-adenosylmethionine synthetase from Mycobacterium marinum
rcsb
molecule tags Transferase
molecule keywords S-adenosylmethionine synthase
source organism Mycobacterium marinum m
missing residues 103-128
total genus Genus: 130
ec nomenclature ec 2.5.1.6: Methionine adenosyltransferase.
pdb deposition date 2011-05-05
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00438 S-AdoMet_synt_N S-adenosylmethionine synthetase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling