3S82A

Structure of a s-adenosylmethionine synthetase from mycobacterium avium
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 133
Knot K +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 14-284 271 1-13, 285-399 13 115 knot
Chain Sequence
GRLFTSESVTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNTVRERILDIGYDSSDKGFDGASCGVNIGIGAQSP--------------------------GDQGLMFGYAINDTPERMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTIEFEDDVPVRLDTVVISTQHAADIDLENTLTPDIREKVLNTVLNDLAHDTLDTSSTRLLVNPTGKFVVGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNIVAAGLAERVEVQVAYAIGKAAPVGLFIETFGTATVDPVKIEKIVPEVFDLRPGAIIRDLDLLRPIYAQTAAYGHFGRTDVELPWEQLNKVDDLKRAI
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 20-268 249 1-2, 335-373 3-19, 269-334 2 39 slipknot
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1.1 17-343 327 1-3, 360-373 4-16, 344-359 3 14 slipknot
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2.1 18-359 342 1-3, 373-373 4-17, 360-372 3 1 slipknot
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2.1 18-372 355 373-373 1-4 5-17 4 0 slipknot
sequence length 399
structure length 373
publication title Structure of a S-adenosylmethionine synthetase from Mycobacterium avium
rcsb
molecule tags Transferase
molecule keywords S-adenosylmethionine synthase
source organism Mycobacterium avium
missing residues 103-128
total genus Genus: 133
ec nomenclature ec 2.5.1.6: Methionine adenosyltransferase.
pdb deposition date 2011-05-27
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00438 S-AdoMet_synt_N S-adenosylmethionine synthetase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling