3S88I

Crystal structure of sudan ebolavirus glycoprotein (strain gulu) bound to 16f6
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 77-140 64 1-76 145-280 141-144 76 136 slipknot
Chain Sequence
SMPLGVVTNSTLEVTEIDQLVCKDHLASTDQLKSVGLNLEGSGVSTDIPSATKRWGFRSGVPPKVVSYEAGEWAENCYNLEIKKPDGSECLPPPPDGVRGFPRCRYVHKAQGTGPCPGDYAFHKDGAFFLYDRLASTVIYRGVNFAEGVIAFLILAKPKET-------------------YYATSYLEYEIENFGAQHSTTLFKIDNNTFVRLDRPHTPQFLFQLNDTIHLHQQLSNTTGRLIWTLDANINADIGEQLRGEELSFEAL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 77-138 62 1-76 146-249 139-145 76 104 slipknot
view details
1.1 81-140 60 1-76, 146-249 77-80, 141-145 76 104 slipknot
missing residues 162-180, 257-268
publication title A shared structural solution for neutralizing ebolaviruses.
pubmed doi rcsb
structure length 249
molecule tags Immune system/viral protein
source organism Mus musculus
sequence length 280
total genus Genus: 43
molecule keywords 16F6 - Heavy chain
ec nomenclature
pdb deposition date 2011-05-27
KnotProt deposition date 2014-09-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF01611 Filo_glycop Filovirus glycoprotein
Image from the rcsb pdb (www.rcsb.org)
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