3SO4A

Methionine-adenosyltransferase from entamoeba histolytica
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 114
Knot K +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 14-273 260 1-13, 274-390 13 117 knot
Chain Sequence
RFFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVIDIPKIVRGVVKSIGYDDTNKGFDYQTCSVLSCVEQQSQD-----------EDIGAGDQGIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGILPWLRPDSKSQVTLEYEEVEGHLKPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRFVIGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCHRVLVQLSYAIGVSHPLSINVNTYGTGICDESILVDIVNKNFDMRPGMIIKELGLTRPIFQKTAVGGHFGRNDPDFKWEFPKELEIPAELKPKLL
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 18-268 251 1-2, 340-379 3-17, 269-339 2 40 slipknot
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2.1 18-353 336 354-379 1-3 4-17 3 25 slipknot
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2.1 19-355 337 356-379 1-17 18-18 17 23 slipknot
sequence length 390
structure length 379
publication title Methionine-adenosyltransferase from Entamoeba histolytica
rcsb
molecule tags Transferase
molecule keywords Methionine-adenosyltransferase
source organism Entamoeba histolytica
missing residues 101-111
total genus Genus: 114
ec nomenclature ec 2.5.1.6: Methionine adenosyltransferase.
pdb deposition date 2011-06-29
KnotProt deposition date 2014-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00438 S-AdoMet_synt_N S-adenosylmethionine synthetase, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling