3TDEA

Crystal structure of s-adenosylmethionine synthetase rv1392 from mycobacterium tuberculosis
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 124
Knot K +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 13-283 271 1-12, 284-398 12 115 knot
Chain Sequence
RLFTSESVTEGHPDKICDAISDSVLDALLAADPRSRVAVETLVTTGQVHVVGEVTTSAKEAFADITNTVRARILEIGYDSSDKGFDGATCGVNIGIGA-----------------------------GDQGLMFGYAINATPELMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTIAYEDNVPVRLDTVVISTQHAADIDLEKTLDPDIREKVLNTVLDDLAHETLDASTVRVLVNPTGKFVLGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLAERVEVQVAYAIGKAAPVGLFVETFGTETEDPVKIEKAIGEVFDLRPGAIIRDLNLLRPIYAPTAAYGHFGRTDVELPWEQLDKVDDLKRAI
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 16-349 334 1-15, 350-369 15 20 knot
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2.1 17-262 246 1-16 324-369 263-323 16 46 slipknot
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1.1 16-336 321 1-2, 349-369 3-15, 337-348 2 21 slipknot
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1.1 16-348 333 1-2, 350-369 3-15, 349-349 2 20 slipknot
sequence length 398
structure length 369
publication title Crystal structure of S-adenosylmethionine synthetase Rv1392 from Mycobacterium tuberculosis
rcsb
molecule tags Transferase
molecule keywords S-adenosylmethionine synthase
source organism Mycobacterium tuberculosis
missing residues 99-127
total genus Genus: 124
ec nomenclature ec 2.5.1.6: Methionine adenosyltransferase.
pdb deposition date 2011-08-10
KnotProt deposition date 2014-07-31
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling