3TT1A

Crystal structure of leut in the outward-open conformation in complex with fab
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 198
Slipknot S +31 41 +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 36-261 226 262-503 1-19 20-35 19 241 slipknot
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41 13-293 281 1-12 345-503 294-344 12 159 slipknot
Chain Sequence
REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYFVYIESWTLGFAIKFLVGLVPE-----TDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEAAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAERR
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2 11-284 274 1-10 297-498 285-296 10 202 slipknot
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4.1 12-298 287 1-11 313-498 299-312 11 186 slipknot
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4.1 6-316 311 1-5 325-498 317-324 5 174 slipknot
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3.2 18-333 316 1-17 348-498 334-347 17 151 slipknot
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4.1 11-296 286 1-2, 299-498 3-10, 297-298 2 200 slipknot
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3.2 10-327 318 1-3, 333-498 4-9, 328-332 3 166 slipknot
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3.2 17-312 296 1-10, 318-498 11-16, 313-317 10 181 slipknot
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1.1 21-278 258 1-15, 285-498 16-20, 279-284 15 214 slipknot
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2.1 34-252 219 1-16, 268-498 17-33, 253-267 16 231 slipknot
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1.1 34-267 234 1-16, 271-498 17-33, 268-270 16 228 slipknot
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2.1 41-347 307 1-16, 394-498 17-40, 348-393 16 105 slipknot
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2.1 40-407 368 1-16, 458-498 17-39, 408-457 16 41 slipknot
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2.1 41-458 418 459-498 1-16 17-40 16 39 slipknot
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2.1 26-275 250 1-19, 286-498 20-25, 276-285 19 213 slipknot
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1.1 35-240 206 1-20, 248-498 21-34, 241-247 20 251 slipknot
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1.1 29-273 245 1-21, 280-498 22-28, 274-279 21 219 slipknot
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1.1 41-269 229 1-25, 289-498 26-40, 270-288 25 210 slipknot
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2.1 35-288 254 1-27, 290-498 28-34, 289-289 27 209 slipknot
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1.1 42-273 232 1-40, 289-498 41-41, 274-288 40 210 slipknot
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1.1 36-248 213 1-28, 255-498 29-35, 249-254 28 244 slipknot
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1.1 36-254 219 1-33, 256-498 34-35, 255-255 33 243 slipknot
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2.1 39-399 361 1-29, 407-498 30-38, 400-406 29 92 slipknot
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2.1 41-259 219 1-33, 269-498 34-40, 260-268 33 230 slipknot
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2.1 40-268 229 1-33, 270-498 34-39, 269-269 33 229 slipknot
sequence length 503
structure length 498
publication title X-ray structures of LeuT in substrate-free outward-open and apo inward-open states.
pubmed doi rcsb
molecule tags Transport protein
molecule keywords Leucine transporter LeuT
source organism Aquifex aeolicus
missing residues 126-130
total genus Genus: 198
ec nomenclature
pdb deposition date 2011-09-13
KnotProt deposition date 2014-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00209 SNF Sodium:neurotransmitter symporter family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling