| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 237-415 | 179 | 1-236 | 431-438 | 416-430 | 236 | 8 | slipknot |
Chain Sequence |
FQSNARKILEEAVSTALELASGKSDGAEVAVSKTTGISVSTRYGEVENVEFNSDGALGITVYHQNRKGSASSTDLSPQAIARTVQAALDIARYTSPDPCAGVADKELLAFDAPNLDLFHPAEVSPDEAIELAARAEQAALQADKRITNTEGGSFNSHYGVKVFGNSHGMLQGYCSTRHSLFSCVIAEE--DMERDYAYTIGRAMSDLQTPEWVGADCARRTLSRLSPRKLSTMKAPVIFANEVATGLFGHLVGAIAGGSVYRKSTFLLDSLGKQILPDWLTIEEHPHLLKGLASTPFDSEGVRTERRDIIKDGILTQWLLTSYSARKLGLKSTGHAGGIHNWRIAGQGLSFEQMLKEMGTGLVVTELMGQGVSAITGDYSRGAAGFWVENGEIQYPVSEITIAGNLKDMWRNIVTVGNDIETRSNIQCGSVLLPEMKI
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1 | 235-422 | 188 | 1-234 | 432-436 | 423-431 | 234 | 5 | slipknot | ||
| view details |
 |
3.1 | 227-415 | 189 | 1-61, 423-436 | 62-226, 416-422 | 61 | 14 | slipknot | |||
| view details |
|
3.1 | 235-415 | 181 | 1-226, 423-436 | 227-234, 416-422 | 226 | 14 | slipknot |
| sequence length |
438
|
| structure length |
436
|
| publication title |
Crystal Struture of Putative Peptide Maturation Protein from
rcsb |
| molecule tags |
Peptide binding protein
|
| molecule keywords |
Putative peptide maturation protein
|
| source organism |
Shigella flexneri
|
| missing residues |
189-190
|
| total genus |
 Genus: 122
|
| ec nomenclature | |
| pdb deposition date | 2011-09-19 |
| KnotProt deposition date | 2014-08-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01523 | PmbA_TldD | Putative modulator of DNA gyrase |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
