3USLA

Crystal structure of leut bound to l-selenomethionine in space group c2 from lipid bicelles
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 209
Slipknot S +31 41 +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 37-263 227 264-505 1-24 25-36 24 241 slipknot
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41 13-293 281 1-12 349-505 294-348 12 157 slipknot
Chain Sequence
REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPP---TDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAERRRNM
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2m 12-286 275 1-11 298-502 287-297 11 205 slipknot
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4.1 10-298 289 1-9 307-502 299-306 9 196 slipknot
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4.1 6-306 301 1-5 311-502 307-310 5 192 slipknot
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3.2 7-315 309 1-6 324-502 316-323 6 179 slipknot
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3.2 6-326 321 1-5 334-502 327-333 5 169 slipknot
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3.2 13-332 320 1-12 348-502 333-347 12 155 slipknot
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4.1 10-316 307 1-6, 321-502 7-9, 317-320 6 182 slipknot
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3.2 11-331 321 1-5, 333-502 6-10, 332-332 5 170 slipknot
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4.1 12-325 314 1-6, 331-502 7-11, 326-330 6 172 slipknot
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2.1 31-259 229 1-17, 271-502 18-30, 260-270 17 232 slipknot
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1.1 23-273 251 1-17, 278-502 18-22, 274-277 17 225 slipknot
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2.1 42-428 387 429-502 1-17 18-41 17 73 slipknot
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2.1 41-353 313 1-18, 398-502 19-40, 354-397 18 105 slipknot
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1.1 32-242 211 1-23, 251-502 24-31, 243-250 23 252 slipknot
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2.1 31-251 221 1-23, 258-502 24-30, 252-257 23 245 slipknot
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2.1 42-407 366 1-25, 429-502 26-41, 408-428 25 74 slipknot
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1.1 36-244 209 1-31, 250-502 32-35, 245-249 31 253 slipknot
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2.1 41-258 218 1-32, 269-502 33-40, 259-268 32 234 slipknot
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2.1 41-268 228 1-32, 275-502 33-40, 269-274 32 228 slipknot
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2.1 39-254 216 1-34, 259-502 35-38, 255-258 34 244 slipknot
sequence length 505
structure length 502
publication title Structures of LeuT in bicelles define conformation and substrate binding in a membrane-like context.
pubmed doi rcsb
molecule tags Transport protein
molecule keywords Transporter
source organism Aquifex aeolicus
missing residues 128-130
total genus Genus: 209
ec nomenclature
pdb deposition date 2011-11-23
KnotProt deposition date 2014-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00209 SNF Sodium:neurotransmitter symporter family
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling