| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 49-321 | 273 | 1-48 | 339-411 | 322-338 | 48 | 73 | slipknot |
Chain Sequence |
KYIEYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKICNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVATFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVCAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
2.1 | 49-312 | 264 | 1-48 | 347-411 | 313-346 | 48 | 65 | slipknot | ||
| view details |
|
2.1 | 42-358 | 317 | 1-41 | 372-411 | 359-371 | 41 | 40 | slipknot | ||
| view details |
 |
1.1 | 58-331 | 274 | 1-49, 339-411 | 50-57, 332-338 | 49 | 73 | slipknot | |||
| view details |
|
2.1 | 57-324 | 268 | 1-50, 332-411 | 51-56, 325-331 | 50 | 80 | slipknot | |||
| view details |
|
1.1 | 59-315 | 257 | 1-51, 325-411 | 52-58, 316-324 | 51 | 87 | slipknot | |||
| view details |
|
1.1 | 60-319 | 260 | 1-56, 330-411 | 57-59, 320-329 | 56 | 82 | slipknot | |||
| view details |
|
1.1 | 61-320 | 260 | 1-59, 330-411 | 60-60, 321-329 | 59 | 82 | slipknot |
| sequence length |
411
|
| structure length |
411
|
| publication title |
Crystal structure of an asymmetric trimer of a bacterial glutamate transporter homolog.
pubmed doi rcsb |
| molecule tags |
Transport protein
|
| molecule keywords |
sodium-coupled L-aspartate transporter
|
| source organism |
Pyrococcus horikoshii
|
| total genus |
 Genus: 134
|
| ec nomenclature | |
| pdb deposition date | 2011-12-22 |
| KnotProt deposition date | 2014-08-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00375 | SDF | Sodium:dicarboxylate symporter family |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
