3V8GA

Crystal structure of an asymmetric trimer of a glutamate transporter homologue (gltph)
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 49-321 273 1-48 339-411 322-338 48 73 slipknot
Chain Sequence
KYIEYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKICNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVATFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVCAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 49-312 264 1-48 347-411 313-346 48 65 slipknot
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2.1 42-358 317 1-41 372-411 359-371 41 40 slipknot
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1.1 58-331 274 1-49, 339-411 50-57, 332-338 49 73 slipknot
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2.1 57-324 268 1-50, 332-411 51-56, 325-331 50 80 slipknot
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1.1 59-315 257 1-51, 325-411 52-58, 316-324 51 87 slipknot
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1.1 60-319 260 1-56, 330-411 57-59, 320-329 56 82 slipknot
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1.1 61-320 260 1-59, 330-411 60-60, 321-329 59 82 slipknot
publication title Crystal structure of an asymmetric trimer of a bacterial glutamate transporter homolog.
pubmed doi rcsb
structure length 411
molecule tags Transport protein
source organism Pyrococcus horikoshii
sequence length 411
total genus Genus: 134
molecule keywords sodium-coupled L-aspartate transporter
ec nomenclature
pdb deposition date 2011-12-22
KnotProt deposition date 2014-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00375 SDF Sodium:dicarboxylate symporter family
Image from the rcsb pdb (www.rcsb.org)
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