3VE0I

Crystal structure of sudan ebolavirus glycoprotein (strain boniface) bound to 16f6
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 75-141 67 1-74 145-280 142-144 74 136 slipknot
Chain Sequence
SMPLGVVTNSTLEVTEIDQLVCKDHLASTDQLKSVGLNLEGSGVSTDIPSATKRWGFRSGVPPKVVSYEAGEWAENCYNLEIKKPDGSECLPPPPDGVRGFPRCRYVHKAQGTGPCPGDYAFHKDGAFFLYDRLASTVIYRGVNFAEGVIAFLILAKPKE---------------------YATSYLEYEIENFGAQHSTTLFKINNNTFVLLDRPHTPQFLFQLNDTIHLHQQLSNTTGKLIWTLDANINADIQLRGEELSFETL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 78-138 61 1-77 146-245 139-145 77 100 slipknot
view details
1.1 82-140 59 1-77, 146-245 78-81, 141-145 77 100 slipknot
missing residues 161-181, 255-268
publication title Structural basis for differential neutralization of ebolaviruses.
pubmed doi rcsb
structure length 245
molecule tags Immune system/viral protein
source organism Sudan ebolavirus
sequence length 280
total genus Genus: 40
molecule keywords Envelope glycoprotein
ec nomenclature
pdb deposition date 2012-01-06
KnotProt deposition date 2014-09-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF01611 Filo_glycop Filovirus glycoprotein
Image from the rcsb pdb (www.rcsb.org)
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