| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|
 |
+ 31 | 45-277 | 233 | 1-44, 278-334 | 44 | 57 | knot |
| Fingerprint | Knot forming loop | Loop type | ||||
|---|---|---|---|---|---|---|
|
|
K +31 | Chain closureGlu3 <-> Pro335 ... Asp221 <-> Bridging ionMg602 <-> Asp43 ... Met219 <-> Bridging ionMg603 <-> Asp42 ... Glu3 |
probabilistic | |||
|
|
K +31 | Chain closureGlu3 <-> Pro335 ... Asp221 <-> Bridging ionMg602 <-> Asp84 ... Met219 <-> Bridging ionMg603 <-> Asp42 ... Glu3 |
probabilistic | |||
|
|
K +31 | Chain closureGlu3 <-> Pro335 ... Asp221 <-> Bridging ionMg602 <-> Asp84 ... Met219 <-> Bridging ionMg603 <-> Asp43 ... Glu3 |
probabilistic | |||
|
|
K +31 | Chain closureGlu3 <-> Pro335 ... Asp221 <-> Bridging ionMg602 <-> Asp43 ... Asp59 <-> Bridging ionMg601 <-> Asp84 ... Met219 <-> Bridging ionMg603 <-> Asp42 ... Glu3 |
probabilistic |
Chain Sequence |
EKIKLEHGAGGEIMEELLRDVILKTLTLKSAGGIGLDALDDGATIPFGDKHIVFTIDGHTVKPLFFPGGDIGRLAVSGTVNDLAVMGAEPIALANSMIIGEGLDMEVLKRVLKSMDETAREVPVPIVTGDTKVVEDKIEMFVITAGIGIAEHPVSDAGAKVGDAVLVSGTIGDHGIALMSHREGIAFETELKSDVAPIWDVVKAVAETIGWENIHAMKDPTRAGLSNALNEIARKSNVGILVREADIPIRPEVRAASEMLGISPYDVANEGKVVMVVAREYAEEALEAMRKTEKGRNAAIIGEVIADYRGKVLLETGIGGKRFMEPPEGDPVP
|
| sequence length |
333
|
| structure length |
333
|
| publication title |
Crystal structures of the HypCD complex and the HypCDE ternary complex: transient intermediate complexes during [NiFe] hydrogenase maturation
pubmed doi rcsb |
| molecule tags |
Metal binding protein/transferase
|
| molecule keywords |
Hydrogenase expression/formation protein HypC
|
| source organism |
Thermococcus kodakarensis
|
| total genus |
 Genus: 98
|
| ec nomenclature | |
| pdb deposition date | 2012-10-02 |
| KnotProt deposition date | 2018-10-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| C | PF00586 | AIRS | AIR synthase related protein, N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
