| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+61 | 62-279 | 218 | 1-61, 280-298 | 61 | 19 | knot | ||||
| view details |
 |
+31 | 121-236 | 116 | 1-28, 281-298 | 29-120, 237-280 | 28 | 18 | slipknot | |||
| view details |
 |
41 | 125-284 | 160 | 1-116, 290-298 | 117-124, 285-289 | 116 | 9 | slipknot |
Chain Sequence |
RSVLGSFPQVDHHQAKGQLAEVYDDIHNTMRVPWVAFGIRVMSQFPHFIPHAWAALKPNIETRYAEDGADLIRLNSIVPGPVMPNPTPKLLRLGWTESKIEELKTALDLLNYGNPKYLILITAFNEAWHERDTGGRAPQKLRGRDAERIPYGLPNSVEKFNLLDIEKASDRTQTVLRDIRDAFLHHGPASNYRVLGVWPDYLEIALRDSLAPVALSAEYDETARRIRKIAREHVKGFDKPAGVAWRDMTEKLSAEQIAGLTGLLFMYNRFIADITIAIIRLKQAFSGPEDATANKYTN
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
6.1 | 8-292 | 285 | 1-7, 293-298 | 7 | 6 | knot | ||||
| view details |
|
6.1 | 19-284 | 266 | 1-18 | 291-298 | 285-290 | 18 | 8 | slipknot | ||
| view details |
 |
5.27 | 19-276 | 258 | 1-10, 283-298 | 11-18, 277-282 | 10 | 16 | slipknot | |||
| view details |
|
5.27 | 20-277 | 258 | 1-18, 281-298 | 19-19, 278-280 | 18 | 18 | slipknot | |||
| view details |
 |
2.1 | 35-243 | 209 | 1-27, 266-298 | 28-34, 244-265 | 27 | 33 | slipknot | |||
| view details |
|
2.1 | 76-242 | 167 | 1-59, 271-298 | 60-75, 243-270 | 59 | 28 | slipknot | |||
| view details |
 |
1.1 | 69-233 | 165 | 1-60, 240-298 | 61-68, 234-239 | 60 | 59 | slipknot | |||
| view details |
 |
3.1 | 75-235 | 161 | 1-68, 243-298 | 69-74, 236-242 | 68 | 56 | slipknot | |||
| view details |
|
3.1 | 107-237 | 131 | 1-74, 270-298 | 75-106, 238-269 | 74 | 29 | slipknot | |||
| view details |
|
3.1 | 107-269 | 163 | 1-75, 271-298 | 76-106, 270-270 | 75 | 28 | slipknot | |||
| view details |
|
2.1 | 107-270 | 164 | 1-76, 279-298 | 77-106, 271-278 | 76 | 20 | slipknot | |||
| view details |
|
2.1 | 107-278 | 172 | 1-76, 281-298 | 77-106, 279-280 | 76 | 18 | slipknot | |||
| view details |
|
2.1 | 105-233 | 129 | 1-77, 238-298 | 78-104, 234-237 | 77 | 61 | slipknot | |||
| view details |
|
2.1 | 106-233 | 128 | 1-104, 238-298 | 105-105, 234-237 | 104 | 61 | slipknot | |||
| view details |
|
1.1 | 117-235 | 119 | 1-105, 243-298 | 106-116, 236-242 | 105 | 56 | slipknot | |||
| view details |
|
2.1 | 120-241 | 122 | 1-106, 263-298 | 107-119, 242-262 | 106 | 36 | slipknot | |||
| view details |
|
2.1 | 120-262 | 143 | 1-106, 267-298 | 107-119, 263-266 | 106 | 32 | slipknot | |||
| view details |
|
2.1 | 120-266 | 147 | 1-106, 268-298 | 107-119, 267-267 | 106 | 31 | slipknot | |||
| view details |
|
2.1 | 121-241 | 121 | 1-119, 263-298 | 120-120, 242-262 | 119 | 36 | slipknot | |||
| view details |
|
2.1 | 121-263 | 143 | 1-119, 267-298 | 120-120, 264-266 | 119 | 32 | slipknot | |||
| view details |
 |
2.3 | 119-270 | 152 | 1-106, 281-298 | 107-118, 271-280 | 106 | 18 | slipknot | |||
| view details |
|
2.3 | 119-280 | 162 | 1-105, 284-298 | 106-118, 281-283 | 105 | 15 | slipknot | |||
| view details |
|
2.1 | 122-242 | 121 | 1-120, 262-298 | 121-121, 243-261 | 120 | 37 | slipknot | |||
| view details |
|
2.3 | 126-279 | 154 | 1-118, 298-298 | 119-125, 280-297 | 118 | 1 | slipknot |
| sequence length |
298
|
| structure length |
298
|
| publication title |
Binding modes of DL-2-haloacid dehalogenase revealed by crystallography, modeling and isotope effects studies.
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| molecule keywords |
DL-2-haloacid dehalogenase
|
| source organism |
Methylobacterium
|
| total genus |
 Genus: 114
|
| ec nomenclature |
ec
3.8.1.10: 2-haloacid dehalogenase (configuration-inverting). |
| pdb deposition date | 2013-10-07 |
| KnotProt deposition date | 2014-08-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF10778 | DehI | Halocarboxylic acid dehydrogenase DehI |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
