3ZQ5A

Structure of the y263f mutant of the cyanobacterial phytochrome cph1
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 25-274 250 1-24, 275-517 24 243 knot
Chain Sequence
ATTVQLSDQSLRQLETLAIHTAHLIQPHGLVVVLQEPDLTISQISANCTGILGRSPEDLLGRTLGEVFDSFQIDPIQSRLTAGQISSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVCELEPAYTSDNLPFLGFYHMANAALNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLTESILRSAYHCHLTFLKNMGVGASLTISLIKDGHLWGLIACHHQTPKVIPFELRKACEFFGRVVFSNISAQEDTETFDYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGEKLILVGETPDEKAVQYLLQWLENREVQDVFFTSSLSQIYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQEDGKIELHPRQSFDLWKEIVRLQSLPWQSVEIQSALALKKAIVNLILRQAEEHHHH
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 23-311 289 1-22, 312-517 22 206 knot
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3.2m 23-268 246 1-22 278-517 269-277 22 240 slipknot
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4.1 19-277 259 1-18 284-517 278-283 18 234 slipknot
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3.2m 23-292 270 1-22 311-517 293-310 22 207 slipknot
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4.1 27-311 285 1-22, 469-517 23-26, 312-468 22 49 slipknot
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3.2 25-275 251 1-19, 282-517 20-24, 276-281 19 236 slipknot
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3.2 25-281 257 1-19, 285-517 20-24, 282-284 19 233 slipknot
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3.2 27-469 443 470-517 1-22 23-26 22 47 slipknot
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3.2 28-317 290 1-26, 423-517 27-27, 318-422 26 95 slipknot
publication title Spectroscopy and a High-Resolution Crystal Structure of Tyr263 Mutants of Cyanobacterial Phytochrome Cph1.
pubmed doi rcsb
structure length 517
molecule tags Transferase
source organism Synechocystis sp. pcc 6803
sequence length 517
total genus Genus: 154
molecule keywords PHYTOCHROME-LIKE PROTEIN CPH1
ec nomenclature ec 2.7.13.3: Histidine kinase.
pdb deposition date 2011-06-07
KnotProt deposition date 2014-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00360 PHY Phytochrome region
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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