3ZXXA

Structure of self-cleaved protease domain of pata
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 90
Knot K +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 17-79 63 1-16, 80-277 16 198 knot
Chain Sequence
LKGDHNIRVAILDGPVDIAHPCFQGADLTVLPTLAP------GFMSAHGTHVASIIFGQPETSVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDDHGHPLDFSNWGSTYEQQGILAPGEDILGAKPGGGTERLSGTSFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCARRCLA-------GRLNVSGAFTLLKGGNM
Note, that the numbers in the matrix denote the consecutive residues in the loop, not the index of amino acids in the chain!
Knot K 4x +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
+ 31 17-79 63 1-16, 80-278 16 199 knot
Fingerprint Knot forming loop Loop type
K +31 Leu11 ... Met288 probabilistic
K +31 Met288 ... Cys158 <-> Cys156 ...
Chain closureLeu11 <-> Met288
 probabilistic
K +31 Met288 ... Cys269 <-> Cys258 ...
Chain closureLeu11 <-> Met288
 probabilistic
K +31 Met288 ... Cys269 <-> Cys258 ... Cys158 <-> Cys156 ...
Chain closureLeu11 <-> Met288
 probabilistic
Chain Sequence
LKGDHNIRVAILDGPVDIAHPCFQGADLTVLPTLAP------GFMSAHGTHVASIIFGQPETSVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDDHGHPLDFSNWGSTYEQQGILAPGEDILGAKPGGGTERLSGTSFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCARRCLA-------GRLNVSGAFTLLKGGNM
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 14-74 61 1-13, 75-265 13 191 knot
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2.1 10-68 59 1-9 75-265 69-74 9 191 slipknot
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1.1 15-69 55 1-9, 77-265 10-14, 70-76 9 189 slipknot
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2.1 16-89 74 90-265 1-13 14-15 13 175 slipknot
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3.1 15-77 63 1-13, 89-265 14-14, 78-88 13 177 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling