| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 100-143 | 44 | 1-99, 144-187 | 99 | 44 | knot |
Chain Sequence |
RIRLGKVVPSSIRIVLDCAFDDLMNDKEINSLCQQVTRCHSANRTALHPVELFATNFGGRLKTRQDFVLKGQQNNWKRYNPTTKSYLEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAIVDKNRYKNLCQNKASEQGIKTAKLPIDEYIKITDRKILTVNQVFEILSLWLEYRDWEKAFMEVIP
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 100-145 | 46 | 1-99, 146-187 | 99 | 42 | knot | ||||
| view details |
 |
2.1 | 98-142 | 45 | 1-97 | 147-187 | 143-146 | 97 | 41 | slipknot | ||
| view details |
|
3.1 | 101-158 | 58 | 1-99, 177-187 | 100-100, 159-176 | 99 | 11 | slipknot | |||
| view details |
|
3.1 | 102-160 | 59 | 1-100, 177-187 | 101-101, 161-176 | 100 | 11 | slipknot | |||
| view details |
|
2.1 | 102-176 | 75 | 1-99, 182-187 | 100-101, 177-181 | 99 | 6 | slipknot | |||
| view details |
|
3.1 | 102-181 | 80 | 182-187 | 1-99 | 100-101 | 99 | 5 | slipknot |
| sequence length |
187
|
| structure length |
187
|
| publication title |
Crystal structure of tRNA m1G9 methyltransferase Trm10: insight into the catalytic mechanism and recognition of tRNA substrate.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
tRNA (guanine(9)-N1)-methyltransferase
|
| source organism |
Schizosaccharomyces pombe
|
| total genus |
 Genus: 61
|
| ec nomenclature |
ec
2.1.1.221: tRNA (guanine(9)-N(1))-methyltransferase. |
| pdb deposition date | 2013-03-27 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01746 | tRNA_m1G_MT | tRNA (Guanine-1)-methyltransferase |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
