| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
+31 | 100-143 | 44 | 1-99, 144-187 | 99 | 44 | knot |
Chain Sequence |
RIRLGKVVPSSIRIVLDCAFDDLMNDKEINSLCQQVTRCHSANRTALHPVELFATNFGGRLKTRQDFVLKGQQNNWKRYNPTTKSYLEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAIVDKNRYKNLCQNKASEQGIKTAKLPIDEYIKITDRKILTVNQVFEILSLWLEYRDWEKAFMEVIP
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
3.1 | 100-168 | 69 | 1-99, 169-187 | 99 | 19 | knot | ||||
| view details |
 |
2.1 | 86-142 | 57 | 1-85 | 148-187 | 143-147 | 85 | 40 | slipknot | ||
| view details |
|
3.1 | 100-144 | 45 | 1-99 | 169-187 | 145-168 | 99 | 19 | slipknot | ||
| view details |
|
3.1 | 101-161 | 61 | 1-99, 173-187 | 100-100, 162-172 | 99 | 15 | slipknot | |||
| view details |
|
3.1 | 101-173 | 73 | 1-99, 178-187 | 100-100, 174-177 | 99 | 10 | slipknot |
| sequence length |
187
|
| structure length |
187
|
| publication title |
Crystal structure of tRNA m1G9 methyltransferase Trm10: insight into the catalytic mechanism and recognition of tRNA substrate.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| molecule keywords |
tRNA (guanine(9)-N1)-methyltransferase
|
| source organism |
Schizosaccharomyces pombe
|
| total genus |
 Genus: 67
|
| ec nomenclature |
ec
2.1.1.221: tRNA (guanine(9)-N(1))-methyltransferase. |
| pdb deposition date | 2013-03-27 |
| KnotProt deposition date | 2014-08-19 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01746 | tRNA_m1G_MT | tRNA (Guanine-1)-methyltransferase |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
