4NWJ | KnotProt

Genus: 189

Slipknot S +3₁

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Help Knotting data interpretation Full screen

					Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details				+3₁	8-435	428	1-7	461-504	436-460	7	44	slipknot

Chain Sequence

AKKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVENQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH

Whole chain analysis

Help Knotoid data interpretation Full screen

Subchain analysis

Knotoid cutoff: 0.5

Knotoid matrix content: 1

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Help Knotoid subchains data interpretation Full screen

		Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details	2.1	6-436	431	1-5	442-504	437-441	5	63	slipknot
view details	3.1	7-443	437	1-6	459-504	444-458	6	46	slipknot
view details	2.1	5-458	454	1-4	462-504	459-461	4	43	slipknot

sequence length	504
structure length	504
publication title	Complete catalytic cycle of cofactor-independent phosphoglycerate mutase involves a spring-loaded mechanism pubmed doi rcsb
molecule tags	Isomerase
molecule keywords	2,3-bisphosphoglycerate-independent phosphoglycerate mutase
source organism	Staphylococcus aureus subsp. aureus
total genus	Genus: 189
ec nomenclature	ec 5.4.2.12: Phosphoglycerate mutase (2,3-diphosphoglycerate-independent).
pdb deposition date	2013-12-06
KnotProt deposition date	2015-02-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01676	Metalloenzyme	Metalloenzyme superfamily

Image from the rcsb pdb (www.rcsb.org)

1EJJA 1EQJA 1O98A 1O99A 2IFYA 4NWJA 4NWXA 4QAXA
similar chains in the KnotProt database (40% sequence similarity)

7TL8A
similar chains in the pdb database (40% sequence similarity)

#similar chains in the KnotProt database (40% sequence similarity)
1EJJ A; 1EQJ A; 1O98 A; 1O99 A; 2IFY A; 4NWJ A; 4NWX A; 4QAX A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)
7TL8 A;

4NWJA

Slipknot S +31

Chain Sequence

pfam database annotations

Slipknot S +3₁