4AEZB

Crystal structure of mitotic checkpoint complex
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 84-175 92 1-76, 180-189 77-83, 176-179 76 10 slipknot
Chain Sequence
KGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKTYIRKIVSQLHKWMFAKKIQKLILVITSKCSGEDLERWQFNVEMVD---------NKEDELRVQKEIQALIAQITATVTFLPQLEEQCTFNVLVYADKDSEVPTDWVDSDPRILRDAEQVQLRSFSTSMHKIDCQVAYRV
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 86-162 77 1-74, 176-180 75-85, 163-175 74 5 slipknot
missing residues 96-104
publication title Structure of the Mitotic Checkpoint Complex
pubmed doi rcsb
structure length 180
molecule tags Cell cycle
source organism Schizosaccharomyces pombe
sequence length 189
total genus Genus: 58
molecule keywords WD REPEAT-CONTAINING PROTEIN SLP1
ec nomenclature
pdb deposition date 2012-01-13
KnotProt deposition date 2014-10-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02301 HORMA HORMA domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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