4CBPA

Crystal structure of neural ectodermal development factor imp-l2.
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 47
Slipknot S -31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-31 33-95 63 1-32 99-217 96-98 32 119 slipknot
Chain Sequence
PRNRAFEADWLKFTKTPPTKLQQADGATIEIVCEMMGSQVPSIQWVVGHLPRS----------AEEAPSAIVRVRSSHIIDHVLSEARTYTCVGRTGSKTIYASTVVHPPRSSRLTPEKTYPGAQKPRIIYTEKTHLDLMGSNIQLPCRVHARPRAEITWLNNENKEIVQGHRHRVLANGDLLISEIKWEDMGNYKCIARNVVGKDTADTFVYPVLN
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1m 8-81 74 1-7 92-207 82-91 7 116 slipknot
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2.1m 33-82 50 1-16, 93-207 17-32, 83-92 16 115 slipknot
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1.1m 45-81 37 1-32, 91-207 33-44, 82-90 32 117 slipknot
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1.1m 45-90 46 1-32, 93-207 33-44, 91-92 32 115 slipknot
sequence length 217
structure length 207
publication title Structural Analysis of Imp-L2 Function
rcsb
molecule tags Cell adhesion
molecule keywords NEURAL/ECTODERMAL DEVELOPMENT FACTOR IMP-L2
source organism Drosophila melanogaster
missing residues 54-63
total genus Genus: 47
ec nomenclature
pdb deposition date 2013-10-15
KnotProt deposition date 2015-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07679 I-set Immunoglobulin I-set domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling