4CHJA

Structure of inner membrane complex (imc) sub-compartment protein 3 (isp3) from toxoplasma gondii
Warning
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 33
Knot K 41

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 5-128 124 1-4, 129-139 4 11 knot
Chain Sequence
ADLEIGREGEV-----IQVSKEAFDNWMNRYEAGDTMEVLFPDGHRIECNLKIDRPKNFMNLTFNQKVRPIQLDDIAAVLYGSKMLRN----------PCVVGFRLASSGRAIAFSFKDITDAQCFVSFLDDEIKKNQE
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2m 5-108 104 1-4 117-124 109-116 4 8 slipknot
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3.2 6-119 114 1-2, 124-124 3-5, 120-123 2 1 slipknot
sequence length 139
structure length 124
publication title The Inner Membrane Complex Sub-Compartment Proteins Critical for Replication of the Apicomplexan Parasite Toxoplasma Gondii Adopt a Pleckstrin Homology Fold
pubmed doi rcsb
molecule tags Cell cycle
molecule keywords IMC SUB-COMPARTMENT PROTEIN ISP3
source organism Toxoplasma gondii
missing residues 12-16, 84-93
total genus Genus: 33
ec nomenclature
pdb deposition date 2013-12-03
KnotProt deposition date 2014-08-13
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling