4D1DA

Structure of mhp1, a nucleobase-cation-symport-1 family transporter with the inhibitor 5-(2-naphthylmethyl)-l-hydantoin.
Slipknot S +31 41 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 49-221 173 222-456 1-30 31-48 30 234 slipknot
view details
41 26-260 235 1-25 302-456 261-301 25 155 slipknot
Chain Sequence
SLLNPSNAPTRYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRVFTFKTGVIVSAVVGLLMMPWQFAGVLNTFLNLLASALGPLAGIMISDYFLVRRRRISLHDLYRTKGIYTYWRGVNWVALAVYAVALAVSFLTPDLMFVTGLIAALLLHIPAMRWVAKTFPLFSEAESRNEDYL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.2 23-254 232 1-22 274-456 255-273 22 183 slipknot
view details
4.1 19-273 255 1-18 294-456 274-293 18 163 slipknot
view details
3.2 20-289 270 1-2, 304-456 3-19, 290-303 2 153 slipknot
view details
3.2 20-303 284 1-2, 305-456 3-19, 304-304 2 152 slipknot
view details
4.1 33-280 248 1-18, 301-456 19-32, 281-300 18 156 slipknot
view details
3.2 32-300 269 1-19, 304-456 20-31, 301-303 19 153 slipknot
view details
3.2 30-271 242 1-22, 278-456 23-29, 272-277 22 179 slipknot
view details
2.3 31-259 229 1-24, 266-456 25-30, 260-265 24 191 slipknot
view details
2.1 49-217 169 1-25, 244-456 26-48, 218-243 25 213 slipknot
view details
2.1 33-311 279 1-26, 333-456 27-32, 312-332 26 124 slipknot
view details
2.1 57-343 287 344-456 1-29 30-56 29 112 slipknot
view details
1.1 52-242 191 1-37, 261-456 38-51, 243-260 37 196 slipknot
view details
2.1 44-301 258 1-37, 307-456 38-43, 302-306 37 150 slipknot
view details
1.1 54-242 189 1-51, 260-456 52-53, 243-259 51 197 slipknot
view details
3.1 57-242 186 1-53, 261-456 54-56, 243-260 53 196 slipknot
view details
2.1 55-224 170 1-49, 239-456 50-54, 225-238 49 218 slipknot
view details
2.1 55-314 260 1-49, 339-456 50-54, 315-338 49 118 slipknot
publication title Molecular Mechanism of Ligand Recognition by Membrane Transport Protein, Mhp1.
pubmed doi rcsb
structure length 456
molecule tags Transport protein
source organism Microbacterium liquefaciens
sequence length 456
total genus Genus: 174
molecule keywords HYDANTOIN TRANSPORT PROTEIN
ec nomenclature
pdb deposition date 2014-05-01
KnotProt deposition date 2014-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02133 Transp_cyt_pur Permease for cytosine/purines, uracil, thiamine, allantoin
Image from the rcsb pdb (www.rcsb.org)
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling