| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
41 | 14-258 | 245 | 1-13, 259-308 | 13 | 50 | knot |
Chain Sequence |
STCDDEPIHIPGAIQPHGLLLALAADMTIVAGSDNLPELTGLAIGALIGRSAADVFDSETHNRLTIALAEPGAAVGAPIAVGFTMPDGERAFNGSWHRHDQLVFLELEPPQRDVRYPQAFFRSVRSAIRRLQAAETLESACAAAAQEVREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARRLYTINPVRIIPDINYRPVPVTPDLNPRTGRPIDLSFAILRSVSPVHLEYMRNIGMHGTMSISILRGERLWGLIACHHRKPNYVDLEVRQACELVAQVLAWQIGVMEEQAL
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
4.1 | 11-296 | 286 | 1-10, 297-308 | 10 | 12 | knot | ||||
| view details |
 |
3.2m | 12-254 | 243 | 1-11 | 263-308 | 255-262 | 11 | 46 | slipknot | ||
| view details |
|
4.1 | 9-262 | 254 | 1-8 | 267-308 | 263-266 | 8 | 42 | slipknot | ||
| view details |
|
3.2m | 12-266 | 255 | 1-11 | 293-308 | 267-292 | 11 | 16 | slipknot | ||
| view details |
 |
3.2 | 15-294 | 280 | 295-308 | 1-9 | 10-14 | 9 | 13 | slipknot |
| sequence length |
308
|
| structure length |
308
|
| publication title |
Dimerization properties of the RpBphP2 chromophore-binding domain crystallized by homologue-directed mutagenesis.
pubmed doi rcsb |
| molecule tags |
Signaling protein
|
| molecule keywords |
Bacteriophytochrome (Light-regulated signal transduction his
|
| source organism |
Rhodopseudomonas palustris
|
| total genus |
 Genus: 94
|
| ec nomenclature | |
| pdb deposition date | 2012-03-02 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01590 | GAF | GAF domain |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
