4E04A

Rpbphp2 chromophore-binding domain crystallized by homologue-directed mutagenesis.
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 14-258 245 1-13, 259-308 13 50 knot
Chain Sequence
STCDDEPIHIPGAIQPHGLLLALAADMTIVAGSDNLPELTGLAIGALIGRSAADVFDSETHNRLTIALAEPGAAVGAPIAVGFTMPDGERAFNGSWHRHDQLVFLELEPPQRDVRYPQAFFRSVRSAIRRLQAAETLESACAAAAQEVREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARRLYTINPVRIIPDINYRPVPVTPDLNPRTGRPIDLSFAILRSVSPVHLEYMRNIGMHGTMSISILRGERLWGLIACHHRKPNYVDLEVRQACELVAQVLAWQIGVMEEQAL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 11-296 286 1-10, 297-308 10 12 knot
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3.2m 12-254 243 1-11 263-308 255-262 11 46 slipknot
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4.1 9-262 254 1-8 267-308 263-266 8 42 slipknot
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3.2m 12-266 255 1-11 293-308 267-292 11 16 slipknot
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3.2 15-294 280 295-308 1-9 10-14 9 13 slipknot
publication title Dimerization properties of the RpBphP2 chromophore-binding domain crystallized by homologue-directed mutagenesis.
pubmed doi rcsb
structure length 308
molecule tags Signaling protein
source organism Rhodopseudomonas palustris
sequence length 308
total genus Genus: 94
molecule keywords Bacteriophytochrome (Light-regulated signal transduction his
ec nomenclature
pdb deposition date 2012-03-02
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01590 GAF GAF domain
Image from the rcsb pdb (www.rcsb.org)
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