| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
41 | 24-261 | 238 | 1-23, 262-628 | 23 | 367 | knot |
Chain Sequence |
GSPAFGTADLSNCEREEIHLAGSIQPHGALLVVSEPDHRIIQASANAAEFLNLGSVLGVPLAEIDGDLLIKILPHLDPTAEGMPVAVRCRIGNPSTEYDGLMHRPPEGGLIIELERAGPPIDLSGTLAPALERIRTAGSLRALCDDTALLFQQCTGYDRVMVYRFDEQGHGEVFSERHVPGLESYFGNRYPSSDIPQMARRLYERQRVRVLVDVSYQPVPLEPRLSPLTGRDLDMSGCFLRSMSPIHLQYLKNMGVRATLVVSLVVGGKLWGLVACHHYLPRFIHFELRAICELLAEAIATRITALESFAQSQSELFVQRLEQRMIEAITREGDWRAAIFDTSQSILQPLHADGCALVYEDQIRTIGDVPSTQDVREIAGWLDRQPRAAVTSTASLGLDVPELAHLTRMASGVVAAPISDHRGEFLMWFRPERVHTVTWGGDPKKPFTMGDTPADLSPRRSFAKWHQVVEGTSDPWTAADLAAARTIGQTVADIVLQFRAVRTLIAREQYEQFSSQVHASMQPVLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRNVAELIDHGRGWRGEVLLRGAGNRPLPLAVRADPVTRTEDQSLGFVLIFSDATDRRTAD
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
4.1 | 23-589 | 567 | 1-22, 590-628 | 22 | 39 | knot | ||||
| view details |
 |
3.2m | 20-257 | 238 | 1-19 | 267-628 | 258-266 | 19 | 362 | slipknot | ||
| view details |
|
3.2m | 22-280 | 259 | 1-21 | 303-628 | 281-302 | 21 | 326 | slipknot | ||
| view details |
|
4.1 | 23-300 | 278 | 1-22 | 590-628 | 301-589 | 22 | 39 | slipknot | ||
| view details |
|
4.1 | 14-266 | 253 | 1-7, 270-628 | 8-13, 267-269 | 7 | 359 | slipknot | |||
| view details |
|
3.2m | 23-267 | 245 | 1-8, 280-628 | 9-22, 268-279 | 8 | 349 | slipknot | |||
| view details |
|
3.2m | 23-279 | 257 | 1-8, 285-628 | 9-22, 280-284 | 8 | 344 | slipknot | |||
| view details |
|
3.2m | 24-263 | 240 | 1-17, 269-628 | 18-23, 264-268 | 17 | 360 | slipknot | |||
| view details |
 |
3.2 | 26-299 | 274 | 300-628 | 1-21 | 22-25 | 21 | 328 | slipknot |
| sequence length |
628
|
| structure length |
628
|
| publication title |
Structure of a bacteriophytochrome and light-stimulated protomer swapping with a gene repressor.
pubmed rcsb |
| molecule tags |
Signaling protein
|
| molecule keywords |
bacteriophytochrome
|
| source organism |
Rhodopseudomonas palustris
|
| total genus |
 Genus: 133
|
| ec nomenclature |
ec
2.7.13.3: Histidine kinase. |
| pdb deposition date | 2012-09-01 |
| KnotProt deposition date | 2014-07-31 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF13426 | PAS_9 | PAS domain |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
