4GW9A

Structure of a bacteriophytochrome and light-stimulated protomer swapping with a gene repressor
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 24-261 238 1-23, 262-628 23 367 knot
Chain Sequence
GSPAFGTADLSNCEREEIHLAGSIQPHGALLVVSEPDHRIIQASANAAEFLNLGSVLGVPLAEIDGDLLIKILPHLDPTAEGMPVAVRCRIGNPSTEYDGLMHRPPEGGLIIELERAGPPIDLSGTLAPALERIRTAGSLRALCDDTALLFQQCTGYDRVMVYRFDEQGHGEVFSERHVPGLESYFGNRYPSSDIPQMARRLYERQRVRVLVDVSYQPVPLEPRLSPLTGRDLDMSGCFLRSMSPIHLQYLKNMGVRATLVVSLVVGGKLWGLVACHHYLPRFIHFELRAICELLAEAIATRITALESFAQSQSELFVQRLEQRMIEAITREGDWRAAIFDTSQSILQPLHADGCALVYEDQIRTIGDVPSTQDVREIAGWLDRQPRAAVTSTASLGLDVPELAHLTRMASGVVAAPISDHRGEFLMWFRPERVHTVTWGGDPKKPFTMGDTPADLSPRRSFAKWHQVVEGTSDPWTAADLAAARTIGQTVADIVLQFRAVRTLIAREQYEQFSSQVHASMQPVLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRNVAELIDHGRGWRGEVLLRGAGNRPLPLAVRADPVTRTEDQSLGFVLIFSDATDRRTAD
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 23-589 567 1-22, 590-628 22 39 knot
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3.2m 20-257 238 1-19 267-628 258-266 19 362 slipknot
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3.2m 22-280 259 1-21 303-628 281-302 21 326 slipknot
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4.1 23-300 278 1-22 590-628 301-589 22 39 slipknot
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4.1 14-266 253 1-7, 270-628 8-13, 267-269 7 359 slipknot
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3.2m 23-267 245 1-8, 280-628 9-22, 268-279 8 349 slipknot
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3.2m 23-279 257 1-8, 285-628 9-22, 280-284 8 344 slipknot
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3.2m 24-263 240 1-17, 269-628 18-23, 264-268 17 360 slipknot
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3.2 26-299 274 300-628 1-21 22-25 21 328 slipknot
publication title Structure of a bacteriophytochrome and light-stimulated protomer swapping with a gene repressor.
pubmed rcsb
structure length 628
molecule tags Signaling protein
source organism Rhodopseudomonas palustris
sequence length 628
total genus Genus: 133
molecule keywords bacteriophytochrome
ec nomenclature ec 2.7.13.3: Histidine kinase.
pdb deposition date 2012-09-01
KnotProt deposition date 2014-07-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00360 PHY Phytochrome region
Image from the rcsb pdb (www.rcsb.org)
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